Application of bioinformatics methods in biology 2600-ZMBIOL-1-S2

Lecture: 5 h Computer laboratory: 15 h Unassisted student's work - 55 h Sum: 75 h

W1 - knows biological databases - K_W12 W2 - knows contemporary software allowing carrying out basic bioinformatics analyses - K_W08, K_W12 W3 - uderstands how basic alorithms used in bioinformatics work - K_W08 W4 - knows and understands methodology of marker gene amplicon sequencing for environmental microbial community assessment - K_W02, K_W08, K_W12 W5 - knows and understands methodology of transcriptome sequencing (RNASeq) - K_W02, K_W08, K_W12

U1 - knows how to choose software needed to solve a probome - K_U09 U2 - knows how to choose parameters for choosen software - K_U01, K_U03, K_U04 U3 - knows how to search for information in biological databases and critically interpretes search results - K_U01, K_U04, K_U09 U4 - knows how to analyse marker gene amplicon sequencing data - K_U03, K_U04, K_U07, K_U08, K_U15 U4 - knows how to analyse RNASeq data - K_U03, K_U04, K_U07, K_U08, K_U15

K1 - understands the need for using contemporary software and databases - K_K01, K_K03 K2 - uderstands limitations of methods and algorithms used - K_K06 K3 - can produce report of research team work's results K4 - critically interepretes analyses results - K_K06

- informative (conventional) lecture

- laboratory

- cooperation-based methods
- content-presentation-oriented methods

compulsory course

Basic mathematics (high school level).

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• Description of 2600-ZMBIOL-1-S2 in USOSweb